.. packing_defect documentation master file, created by
   sphinx-quickstart on Thu Mar 15 13:55:56 2018.
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Welcome to packing_defect's documentation!
=========================================================

Analyze membrane packing defects from molecular dynamics trajectories using a fast, grid‑based stamping approach with connected‑component clustering. The toolkit classifies atoms into defect types, writes per‑frame outputs, and summarizes defect size distributions for quick insight.

.. image:: _static/images/packing_defect_overview.png
   :alt: Packing defect analysis overview
   :width: 750px
   :align: center

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   getting_started
   user_guide
   api



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`